GCC Code Coverage Report


Directory: ../../../builds/dumux-repositories/
File: /builds/dumux-repositories/dumux/dumux/multidomain/facet/gridmanager.hh
Date: 2024-09-21 20:52:54
Exec Total Coverage
Lines: 80 85 94.1%
Functions: 110 149 73.8%
Branches: 250 568 44.0%

Line Branch Exec Source
1 // -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
2 // vi: set et ts=4 sw=4 sts=4:
3 //
4 // SPDX-FileCopyrightInfo: Copyright © DuMux Project contributors, see AUTHORS.md in root folder
5 // SPDX-License-Identifier: GPL-3.0-or-later
6 //
7 /*!
8 * \file
9 * \ingroup FacetCoupling
10 * \brief Contains the grid manager class that creates the grids in the context
11 * of hybrid-dimensional coupled models, where the (n-1)-dimensional
12 * domains live on the element facets of the n-dimensional domains.
13 * Also, it allows to extract a grid data object containing parameters
14 * passed to elements and/or boundary segments. All grids are constructed
15 * from a single grid file.
16 */
17 #ifndef DUMUX_FACETCOUPLING_GRID_MANAGER_HH
18 #define DUMUX_FACETCOUPLING_GRID_MANAGER_HH
19
20 #include <cassert>
21 #include <map>
22 #include <tuple>
23 #include <type_traits>
24 #include <vector>
25
26 #include <dune/common/exceptions.hh>
27 #include <dune/common/hybridutilities.hh>
28 #include <dune/grid/common/gridfactory.hh>
29
30 #include <dumux/io/grid/griddata.hh>
31 #include <dumux/common/parameters.hh>
32 #include <dumux/common/indextraits.hh>
33 #include <dumux/common/typetraits/utility.hh>
34
35 #include "gmshreader.hh"
36
37 namespace Dumux {
38 namespace FCGridManagerChecks {
39
40 // The grid creator and grid data classes provided below
41 // require that the grids passed as template arguments are
42 // ordered in descending grid dimension and they must have
43 // the same world dimension. The following helper structs
44 // verify these conditions and are reused below.
45 // evaluates if dim is descending or dimworld is equal for two grids
46 template<bool checkDimWorld, typename G1, typename G2>
47 static constexpr bool evalCondition()
48 {
49 return checkDimWorld ? int(G1::dimensionworld) == int(G2::dimensionworld)
50 : int(G1::dimension) > int(G2::dimension);
51 }
52
53 // helper structs to evaluate conditions on the grid
54 template<bool checkDimWorld, typename... Gs> struct FulfillConditions;
55 template<bool checkDimWorld, typename G1, typename... Gs>
56 struct FulfillConditions<checkDimWorld, G1, Gs...>
57 {
58 using G2 = typename std::tuple_element_t<0, std::tuple<Gs...>>;
59 static constexpr bool value = evalCondition<checkDimWorld, G1, G2>() && FulfillConditions<checkDimWorld, Gs...>::value;
60 };
61 template<bool checkDimWorld, typename G1, typename G2>
62 struct FulfillConditions<checkDimWorld, G1, G2> { static constexpr bool value = evalCondition<checkDimWorld, G1, G2>(); };
63 }
64
65 /*!
66 * \ingroup FacetCoupling
67 * \brief Grid data object to store element and boundary segment markers
68 * for all grids of the hierarchy.
69 *
70 * \tparam Grids the types of the grid hierarchy
71 * \note Grids must be ordered in descending grid dimension
72 */
73 template<typename... Grids>
74 74 class FacetCouplingGridDataWrapper
75 {
76 // make sure all grids have the same world dimension and are ordered in descending dimension
77 static_assert(FCGridManagerChecks::FulfillConditions<false, Grids...>::value, "All grids must have the same world dimension!");
78 static_assert(FCGridManagerChecks::FulfillConditions<true, Grids...>::value, "Grids must be ordered w.r.t the dimension in descending order!");
79
80 //! determine the number of involved grids
81 static constexpr std::size_t numGrids = sizeof...(Grids);
82 //! the i-th grid type
83 template<std::size_t id> using Grid = typename std::tuple_element_t<id, std::tuple<Grids...>>;
84 //! shared ptr to the i-th grid data type
85 template<std::size_t id> using GridDataPtr = std::shared_ptr< GridData<Grid<id>> >;
86 //! the intersection type of the i-th grid
87 template<std::size_t id> using Intersection = typename Grid<id>::LeafGridView::Intersection;
88
89 public:
90 //! export the i-th grid data type
91 template<std::size_t id> using GridData = GridData<Grid<id>>;
92
93 //! set the grid data object for the i-th grid
94 template<std::size_t id>
95 48 void setGridData(GridData<id>&& gridData)
96 {
97
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48 std::get<id>(gridDataPtrTuple_) = std::make_shared<GridData<id>>( std::move(gridData) );
98 48 }
99
100 //! return the grid data for a specific grid
101 template<std::size_t id>
102 std::shared_ptr<const GridData<id>> getSubDomainGridData() const
103 { return std::get<id>(gridDataPtrTuple_); }
104
105 //! Returns domain marker of an element
106 template<std::size_t id>
107 int getElementDomainMarker(const typename Grid<id>::template Codim<0>::Entity& element) const
108
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3150 { return std::get<id>(gridDataPtrTuple_)->getElementDomainMarker(element); }
109
110 //! Returns the boundary marker of an intersection
111 template<std::size_t id>
112 int getBoundaryDomainMarker(const typename Grid<id>::LeafGridView::Intersection& is) const
113 { return std::get<id>(gridDataPtrTuple_)->getBoundaryDomainMarker(is); }
114
115 //! Returns the boundary marker for a given boundary segment index
116 template<std::size_t id>
117 int getBoundaryDomainMarker(int boundarySegmentIndex) const
118
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1440 { return std::get<id>(gridDataPtrTuple_)->getBoundaryDomainMarker(boundarySegmentIndex); }
119
120 //! Returns true if an intersection was inserted during grid creation
121 template<std::size_t id>
122 bool wasInserted(const Intersection<id>& intersection) const
123
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1440 { return std::get<id>(gridDataPtrTuple_)->wasInserted(intersection); }
124
125 private:
126 //! store a shared pointer to a grid data object for each grid
127 using GridDataPtrTuple = typename makeFromIndexedType<std::tuple, GridDataPtr, std::make_index_sequence<numGrids>>::type;
128 GridDataPtrTuple gridDataPtrTuple_;
129 };
130
131 /*!
132 * \ingroup FacetCoupling
133 * \brief Contains the embeddings between grids with codimension one
134 * among the grid hierarchy. All these embedments are given in
135 * insertion indices as they are read directly from the grid.
136 * Therefore, this class furthermore allows access to the insertion
137 * indices of entities. Additionally, it gives access to the grid
138 * views of the different grids on the hierarchy.
139 *
140 * \tparam Grids the types of the grid hierarchy
141 * \note Grids must be ordered in descending grid dimension
142 */
143 template<typename... Grids>
144 class FacetCouplingEmbeddings
145 {
146 // make sure all grids have the same world dimension and are ordered in descending dimension
147 static_assert(FCGridManagerChecks::FulfillConditions<false, Grids...>::value, "All grids must have the same world dimension!");
148 static_assert(FCGridManagerChecks::FulfillConditions<true, Grids...>::value, "Grids must be ordered w.r.t the dimension in descending order!");
149
150 //! the i-th grid type
151 template<std::size_t id> using Grid = typename std::tuple_element_t<id, std::tuple<Grids...>>;
152 //! the i-th grid factory type
153 template<std::size_t id> using GridFactory = typename Dune::GridFactory<Grid<id>>;
154
155 //! we use the bulk grid's index type here
156 using GIType = typename IndexTraits< typename Grid<0>::LeafGridView >::GridIndex;
157 //! the map type to store embedment data
158 using EmbedmentMap = std::unordered_map<GIType, std::vector<GIType>>;
159
160 public:
161 //! export the i-th grid view type
162 template<std::size_t id> using GridView = typename Grid<id>::LeafGridView;
163
164 //! export the number of created grids
165 static constexpr std::size_t numGrids = sizeof...(Grids);
166 //! export the grid id of the bulk grid (descending grid dim -> always zero!)
167 static constexpr int bulkGridId = 0;
168 //! state the dimension of the highest-dimensional grid
169 static constexpr int bulkDim = Grid<bulkGridId>::dimension;
170
171 //! export the bulk grid type
172 using BulkGridView = GridView<bulkGridId>;
173 //! export the type used for indices
174 using GridIndexType = GIType;
175
176 //! return reference to the i-th grid view
177 template<std::size_t id>
178 const GridView<id>& gridView() const
179
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702 { return *std::get<id>(gridViewPtrTuple_); }
180
181 //! return the insertion index of an entity of the i-th grid
182 template<std::size_t id, class Entity>
183 GridIndexType insertionIndex(const Entity& entity) const
184
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916230 { return std::get<id>(gridFactoryPtrTuple_)->insertionIndex(entity); }
185
186 //! Returns the insertion indices of the entities embedded in given element
187 template<std::size_t id>
188 typename std::unordered_map< GridIndexType, std::vector<GridIndexType> >::mapped_type
189 5708 embeddedEntityIndices(const typename Grid<id>::template Codim<0>::Entity& element) const
190 {
191 5708 const auto& map = embeddedEntityMaps_[id];
192 17124 auto it = map.find( std::get<id>(gridFactoryPtrTuple_)->insertionIndex(element) );
193
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11416 if (it != map.end()) return it->second;
194 5420 else return typename std::unordered_map< GridIndexType, std::vector<GridIndexType> >::mapped_type();
195 }
196
197 //! Returns the insertion indices of the entities in which the element is embedded
198 template<std::size_t id>
199 typename std::unordered_map< GridIndexType, std::vector<GridIndexType> >::mapped_type
200 10072 adjoinedEntityIndices(const typename Grid<id>::template Codim<0>::Entity& element) const
201 {
202 10072 const auto& map = adjoinedEntityMaps_[id];
203 30216 auto it = map.find( std::get<id>(gridFactoryPtrTuple_)->insertionIndex(element) );
204
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20144 if (it != map.end()) return it->second;
205 1964 else return typename std::unordered_map< GridIndexType, std::vector<GridIndexType> >::mapped_type();
206 }
207
208 //! Returns const reference to maps of the embedded entities
209 const std::unordered_map< GridIndexType, std::vector<GridIndexType> >& embeddedEntityMap(std::size_t id) const
210
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12 { assert(id < numGrids); return embeddedEntityMaps_[id]; }
211
212 //! Returns non-const reference to maps of the embedded entities
213 std::unordered_map< GridIndexType, std::vector<GridIndexType> >& embeddedEntityMap(std::size_t id)
214 { assert(id < numGrids); return embeddedEntityMaps_[id]; }
215
216 //! Returns const reference to the maps of the adjoined entities of dimension d+1
217 const std::unordered_map< GridIndexType, std::vector<GridIndexType> >& adjoinedEntityMap(std::size_t id) const
218
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12 { assert(id < numGrids); return adjoinedEntityMaps_[id]; }
219
220 //! Returns non-const reference to the maps of the adjoined entities of dimension d+1
221 std::unordered_map< GridIndexType, std::vector<GridIndexType> >& adjoinedEntityMap(std::size_t id)
222 { assert(id < numGrids); return adjoinedEntityMaps_[id]; }
223
224 //! Returns the hierachy's insertion indices that make up the grid for the given id
225 const std::vector<GridIndexType>& gridHierarchyIndices(std::size_t id) const
226
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30796 { assert(id < numGrids); return gridVertexIndices_[id]; }
227
228 //! Returns the number of vertices contained in the entire grid hierarch
229 std::size_t numVerticesInHierarchy() const
230 { return numVerticesInHierarchy_; }
231
232 /*!
233 * \brief Sets the required data for a specific grid on the hierarchy.
234 * \param gridPtr shared pointer to this (id-th) grid
235 * \param gridFactoryPtr shared pointer to this (id-th) grid factory
236 * \param embeddedEntityMap map containing the lower-dimensional entities for this grid's elements
237 * \param adjoinedEntityMap map containing the (d+1)-dimensional elements in which this grid's elements are embedded in
238 * \param gridVertexIndices The hierachy's insertion indices that make up this grid
239 * \param numVerticesInHierarchy Total number of vertices in entire grid hierarchy
240 */
241 template<std::size_t id>
242 316 void setData( std::shared_ptr<Grid<id>> gridPtr,
243 std::shared_ptr<GridFactory<id>> gridFactoryPtr,
244 EmbedmentMap&& embeddedEntityMap,
245 EmbedmentMap&& adjoinedEntityMap,
246 std::vector<GridIndexType>&& gridVertexIndices,
247 std::size_t numVerticesInHierarchy )
248 {
249
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948 std::get<id>(gridViewPtrTuple_) = std::make_shared<GridView<id>>(gridPtr->leafGridView());
250 632 std::get<id>(gridFactoryPtrTuple_) = gridFactoryPtr;
251 632 embeddedEntityMaps_[id] = std::move(embeddedEntityMap);
252 632 adjoinedEntityMaps_[id] = std::move(adjoinedEntityMap);
253 632 gridVertexIndices_[id] = std::move(gridVertexIndices);
254 316 numVerticesInHierarchy_ = numVerticesInHierarchy;
255 316 }
256
257 private:
258 //! data on connectivity between the grids
259 std::array<EmbedmentMap, numGrids> embeddedEntityMaps_;
260 std::array<EmbedmentMap, numGrids> adjoinedEntityMaps_;
261
262 //! Contains the hierarchy insertion indices that make up a lower-dimensional grid
263 std::size_t numVerticesInHierarchy_;
264 std::array<std::vector<GridIndexType>, numGrids> gridVertexIndices_;
265
266 //! tuple to store the grids
267 using Indices = std::make_index_sequence<numGrids>;
268 template<std::size_t id> using GridViewPtr = std::shared_ptr<GridView<id>>;
269 using GridPtrTuple = typename makeFromIndexedType<std::tuple, GridViewPtr, Indices>::type;
270 GridPtrTuple gridViewPtrTuple_;
271
272 //! tuple to store the grid grid factories
273 template<std::size_t id> using GridFactoryPtr = std::shared_ptr< Dune::GridFactory<Grid<id>> >;
274 using GridFactoryPtrTuple = typename makeFromIndexedType<std::tuple, GridFactoryPtr, Indices>::type;
275 GridFactoryPtrTuple gridFactoryPtrTuple_;
276 };
277
278 /*!
279 * \ingroup FacetCoupling
280 * \brief Creates the grids in the context of hybrid-dimensional coupled models,
281 * where the (n-1)-dimensional domains live on the element facets of the
282 * n-dimensional domains.
283 *
284 * \tparam Grids the types of the grid hierarchy
285 * \note Grids must be ordered in descending grid dimension
286 */
287 template<typename... Grids>
288
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296 class FacetCouplingGridManager
289 {
290 // make sure all grids have the same world dimension and are ordered in descending dimension
291 static_assert(FCGridManagerChecks::FulfillConditions<false, Grids...>::value, "All grids must have the same world dimension!");
292 static_assert(FCGridManagerChecks::FulfillConditions<true, Grids...>::value, "Grids must be ordered w.r.t the dimension in descending order!");
293
294 // we use a wrapper class for the grid data containing the data on all grids
295 using GridDataWrapper = FacetCouplingGridDataWrapper<Grids...>;
296 public:
297 //! export the i-th grid type
298 template<std::size_t id> using Grid = typename std::tuple_element_t<id, std::tuple<Grids...>>;
299 //! export the i-th grid pointer type
300 template<std::size_t id> using GridPtr = typename std::shared_ptr< Grid<id> >;
301
302 //! export the number of created grids
303 static constexpr std::size_t numGrids = sizeof...(Grids);
304 //! export the grid id of the bulk grid (descending grid dim -> always zero!)
305 static constexpr int bulkGridId = 0;
306
307 //! export the grid data (wrapper) type, i.e. parameters/markers
308 using GridData = GridDataWrapper;
309 //! export the type storing the embeddings
310 using Embeddings = FacetCouplingEmbeddings<Grids...>;
311
312 //! returns the i-th grid
313 template<std::size_t id>
314 const Grid<id>& grid() const
315
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414 { return *std::get<id>(gridPtrTuple_); }
316
317 //! return a pointer to the grid data object
318 2010 std::shared_ptr<const GridData> getGridData() const
319 {
320
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2010 if (!enableEntityMarkers_)
321 DUNE_THROW(Dune::IOError, "No grid data available");
322 2010 return gridDataPtr_;
323 }
324
325 //! return a pointer to the object containing embeddings
326 std::shared_ptr<const Embeddings> getEmbeddings() const
327
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4508 { return embeddingsPtr_; }
328
329 //! creates the grids from a file given in parameter tree
330 74 void init(const std::string& paramGroup = "")
331 {
332 // reset the grid & embedding data
333
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74 gridDataPtr_ = std::make_shared<GridData>();
334
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74 embeddingsPtr_ = std::make_shared<Embeddings>();
335
336 // get filename and determine grid file extension
337
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74 const auto fileName = getParamFromGroup<std::string>(paramGroup, "Grid.File");
338
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148 const auto ext = getFileExtension(fileName);
339
340 // get some parameters
341
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74 const bool verbose = getParamFromGroup<bool>(paramGroup, "Grid.Verbosity", false);
342
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74 const bool domainMarkers = getParamFromGroup<bool>(paramGroup, "Grid.DomainMarkers", false);
343
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74 const bool boundarySegments = getParamFromGroup<bool>(paramGroup, "Grid.BoundarySegments", false);
344
345 // forward to the corresponding reader
346
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74 if (ext == "msh")
347 {
348
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74 const auto thresh = getParamFromGroup<std::size_t>(paramGroup, "Grid.GmshPhysicalEntityThreshold", 0);
349 138 FacetCouplingGmshReader<Grid<bulkGridId>, numGrids> gmshReader;
350
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140 gmshReader.read(fileName, (boundarySegments ? thresh : 0), verbose);
351
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84 passDataFromReader(gmshReader, domainMarkers, boundarySegments);
352 }
353 else
354 DUNE_THROW(Dune::NotImplemented, "Reader for grid files of type ." + ext);
355
356 // find out if entity markers are active
357
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74 enableEntityMarkers_ = domainMarkers || boundarySegments;
358 74 }
359
360 //! Distributes the grid on all processes of a parallel computation
361 void loadBalance()
362 {
363 using namespace Dune::Hybrid;
364
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56 forEach(integralRange(Dune::Hybrid::size(gridPtrTuple_)), [&](const auto id)
365 {
366
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168 std::get<id>(this->gridPtrTuple_)->loadBalance();
367 });
368 }
369
370 protected:
371 //! return non-const reference to i-th grid
372 template<std::size_t id>
373 Grid<id>& grid_()
374 { return *std::get<id>(gridPtrTuple_); }
375
376 //! return non-const pointer to the object containing embeddings
377 std::shared_ptr<Embeddings> getEmbeddings_()
378 { return embeddingsPtr_; }
379
380 private:
381 //! Returns the filename extension of a given filename
382 74 static std::string getFileExtension(const std::string& fileName)
383 {
384
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74 const auto pos = fileName.rfind('.', fileName.length());
385
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74 if (pos != std::string::npos)
386 74 return(fileName.substr(pos+1, fileName.length() - pos));
387 else
388 DUNE_THROW(Dune::IOError, "Please provide an extension for your grid file ('"<< fileName << "')!");
389 }
390
391 //! Creates the grids using the data in a mesh file reader
392 template<typename MeshFileReader>
393 64 void passDataFromReader(MeshFileReader& reader, bool domainMarkers, bool boundarySegments)
394 {
395
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74 const auto& vertices = reader.gridVertices();
396
397 using namespace Dune::Hybrid;
398
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2286 forEach(integralRange(Dune::Hybrid::size(gridPtrTuple_)), [&](const auto id)
399 {
400 using GridFactory = Dune::GridFactory<Grid<id>>;
401 316 auto factoryPtr = std::make_shared<GridFactory>();
402
403 // insert grid vertices
404
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151520 for (const auto idx : reader.vertexIndices(id))
405
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452664 factoryPtr->insertVertex(vertices[idx]);
406
407 // insert elements
408
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164669 for (const auto& e : reader.elementData(id))
409
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328074 factoryPtr->insertElement(e.gt, e.cornerIndices);
410
411 // insert boundary segments
412
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158 if (boundarySegments)
413
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2016 for (const auto& segment : reader.boundarySegmentData(id))
414
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3840 factoryPtr->insertBoundarySegment(segment);
415
416 // make grid
417
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474 auto gridPtr = std::shared_ptr<Grid<id>>(factoryPtr->createGrid());
418
419 // maybe create and set grid data object
420
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158 if (domainMarkers || boundarySegments)
421 {
422
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96 typename GridDataWrapper::template GridData<id> gridData( gridPtr,
423 factoryPtr,
424 24 std::move(reader.elementMarkerMap(id)),
425 48 std::move(reader.boundaryMarkerMap(id)) );
426
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48 gridDataPtr_->template setGridData<id>( std::move(gridData) );
427 }
428
429 // copy the embeddings
430
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474 embeddingsPtr_->template setData<id>( gridPtr,
431 factoryPtr,
432 158 std::move(reader.embeddedEntityMap(id)),
433 158 std::move(reader.adjoinedEntityMap(id)),
434 316 std::move(reader.vertexIndices(id)),
435 vertices.size() );
436
437 // set the grid pointer
438
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316 std::get<id>(gridPtrTuple_) = gridPtr;
439 });
440 64 }
441
442 //! tuple to store the grids
443 using Indices = std::make_index_sequence<numGrids>;
444 using GridPtrTuple = typename makeFromIndexedType<std::tuple, GridPtr, Indices>::type;
445 GridPtrTuple gridPtrTuple_;
446
447 //! grid data, i.e. parameters and markers
448 bool enableEntityMarkers_;
449 std::shared_ptr<GridData> gridDataPtr_;
450
451 //! data on embeddings
452 std::shared_ptr<Embeddings> embeddingsPtr_;
453 };
454
455 } // end namespace Dumux
456
457 #endif
458