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| 1 | // -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- | ||
| 2 | // vi: set et ts=4 sw=4 sts=4: | ||
| 3 | // | ||
| 4 | // SPDX-FileCopyrightText: Copyright © DuMux Project contributors, see AUTHORS.md in root folder | ||
| 5 | // SPDX-License-Identifier: GPL-3.0-or-later | ||
| 6 | // | ||
| 7 | /*! | ||
| 8 | * \file | ||
| 9 | * \ingroup InputOutput | ||
| 10 | * \brief read from a file into a solution vector | ||
| 11 | */ | ||
| 12 | #ifndef DUMUX_IO_LOADSOLUTION_HH | ||
| 13 | #define DUMUX_IO_LOADSOLUTION_HH | ||
| 14 | |||
| 15 | #include <string> | ||
| 16 | #include <iostream> | ||
| 17 | #include <vector> | ||
| 18 | #include <unordered_set> | ||
| 19 | #include <unordered_map> | ||
| 20 | #include <type_traits> | ||
| 21 | #include <functional> | ||
| 22 | |||
| 23 | #include <dune/common/exceptions.hh> | ||
| 24 | #include <dune/common/indices.hh> | ||
| 25 | #include <dune/grid/common/partitionset.hh> | ||
| 26 | |||
| 27 | #include <dumux/common/parameters.hh> | ||
| 28 | #include <dumux/common/typetraits/isvalid.hh> | ||
| 29 | #include <dumux/common/typetraits/vector.hh> | ||
| 30 | #include <dumux/common/typetraits/state.hh> | ||
| 31 | #include <dumux/io/vtk/vtkreader.hh> | ||
| 32 | #include <dumux/discretization/method.hh> | ||
| 33 | #include <dumux/common/gridcapabilities.hh> | ||
| 34 | |||
| 35 | namespace Dumux { | ||
| 36 | |||
| 37 | /*! | ||
| 38 | * \ingroup InputOutput | ||
| 39 | * \brief a data handle to communicate the solution on ghosts and overlaps | ||
| 40 | * when reading from vtk file in parallel | ||
| 41 | */ | ||
| 42 | template <class Container, class EntityMapper, int codim> | ||
| 43 | 2 | class LoadSolutionDataHandle | |
| 44 | : public Dune::CommDataHandleIF< LoadSolutionDataHandle<Container, EntityMapper, codim>, | ||
| 45 | std::decay_t<decltype(std::declval<Container>()[0])> > | ||
| 46 | { | ||
| 47 | using FieldType = std::decay_t<decltype(std::declval<Container>()[0])>; | ||
| 48 | public: | ||
| 49 |
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2 | LoadSolutionDataHandle(Container& container, |
| 50 | const EntityMapper& mapper) | ||
| 51 | 2 | : mapper_(mapper) | |
| 52 |
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2 | , container_(container) |
| 53 | {} | ||
| 54 | |||
| 55 | ✗ | bool contains(int dim, int cd) const | |
| 56 | ✗ | { return cd == codim; } | |
| 57 | |||
| 58 | //! returns true if size per entity of given dim and codim is a constant | ||
| 59 | bool fixedSize(int dim, int cd) const | ||
| 60 | { return true; } | ||
| 61 | |||
| 62 | template<class EntityType> | ||
| 63 | std::size_t size (const EntityType &e) const | ||
| 64 | { return 1; } | ||
| 65 | |||
| 66 | template<class MessageBufferImp, class EntityType> | ||
| 67 | 32 | void gather(MessageBufferImp& buff, const EntityType& e) const | |
| 68 | { | ||
| 69 | 32 | const auto vIdx = mapper_.index(e); | |
| 70 | 32 | buff.write(container_[vIdx]); | |
| 71 | 32 | } | |
| 72 | |||
| 73 | template<class MessageBufferImp, class EntityType> | ||
| 74 | 32 | void scatter(MessageBufferImp& buff, const EntityType& e, std::size_t n) | |
| 75 | { | ||
| 76 | 32 | const auto vIdx = mapper_.index(e); | |
| 77 | 32 | FieldType tmp; | |
| 78 | 32 | buff.read(tmp); | |
| 79 | 32 | container_[vIdx] = tmp; | |
| 80 | 32 | } | |
| 81 | |||
| 82 | private: | ||
| 83 | EntityMapper mapper_; | ||
| 84 | Container& container_; | ||
| 85 | }; | ||
| 86 | |||
| 87 | /*! | ||
| 88 | * \ingroup InputOutput | ||
| 89 | * \brief read from a vtk file into a solution vector with primary variables without state | ||
| 90 | */ | ||
| 91 | template <class SolutionVector, class PvNameFunc, class GridGeometry> | ||
| 92 | 104 | auto loadSolutionFromVtkFile(SolutionVector& sol, | |
| 93 | const std::string fileName, | ||
| 94 | PvNameFunc&& targetPvNameFunc, | ||
| 95 | const GridGeometry& gridGeometry, | ||
| 96 | const VTKReader::DataType& dataType) | ||
| 97 | -> typename std::enable_if_t<!decltype(isValid(Detail::hasState())(sol[0]))::value, void> | ||
| 98 | { | ||
| 99 | 104 | VTKReader vtu(fileName); | |
| 100 | |||
| 101 | using PrimaryVariables = typename SolutionVector::block_type; | ||
| 102 | using Scalar = typename PrimaryVariables::field_type; | ||
| 103 | constexpr auto dim = GridGeometry::GridView::dimension; | ||
| 104 | const std::size_t targetSolutionSize = PrimaryVariables::dimension; | ||
| 105 | |||
| 106 | std::size_t matchingLoadedArrays = 0; | ||
| 107 |
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322 | for (std::size_t i = 0; i < targetSolutionSize; i++) |
| 108 |
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436 | if (vtu.hasData(targetPvNameFunc(i,0), dataType)) |
| 109 | 216 | matchingLoadedArrays++; | |
| 110 | |||
| 111 |
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104 | if (matchingLoadedArrays < targetSolutionSize) |
| 112 | std::cout << "The loaded solution does not provide a data array for each of the primary variables. \n" | ||
| 113 |
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2 | << "The target solution has "<< targetSolutionSize << " entries, " |
| 114 |
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2 | << "whereas the loaded solution provides only " << matchingLoadedArrays << " data array(s). \n" |
| 115 | << "Make sure that the model concepts are compatible, " | ||
| 116 |
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2 | << "and be sure to provide initial conditions for the missing primary variables. \n"; |
| 117 | |||
| 118 |
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594 | for (std::size_t targetPvIdx = 0; targetPvIdx < targetSolutionSize; ++targetPvIdx) |
| 119 | { | ||
| 120 | 218 | std::vector<Scalar> vec; | |
| 121 |
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218 | const auto targetPvName = targetPvNameFunc(targetPvIdx, 0); |
| 122 | |||
| 123 |
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220 | if (vtu.hasData(targetPvName, dataType)) |
| 124 |
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432 | vec = vtu.readData<std::vector<Scalar>>(targetPvName, dataType); |
| 125 | else | ||
| 126 | { | ||
| 127 | std::cout << "The loaded solution does not have a field named \"" << targetPvName << "\". " | ||
| 128 |
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2 | << "Make sure this field is filled using the initial method in the problem definition. \n"; |
| 129 | continue; | ||
| 130 | } | ||
| 131 | |||
| 132 |
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216 | if (dataType == VTKReader::DataType::cellData) |
| 133 | { | ||
| 134 | 164 | std::size_t i = 0; | |
| 135 |
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17876 | for (const auto& element : elements(gridGeometry.gridView(), Dune::Partitions::interior)) |
| 136 | { | ||
| 137 |
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8856 | const auto eIdx = gridGeometry.elementMapper().index(element); |
| 138 |
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8856 | sol[eIdx][targetPvIdx] = vec[i++]; |
| 139 | } | ||
| 140 | } | ||
| 141 | |||
| 142 | // for staggered face data (which is written out as VTK point data) we just read in the vector | ||
| 143 |
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50 | else if (dataType == VTKReader::DataType::pointData && GridGeometry::discMethod == DiscretizationMethods::staggered) |
| 144 | { | ||
| 145 |
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50 | if (sol.size() != vec.size()) |
| 146 | ✗ | DUNE_THROW(Dune::InvalidStateException, "Solution size (" << sol.size() << ") does not match input size (" << vec.size() << ")!"); | |
| 147 | |||
| 148 |
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3790 | for (std::size_t i = 0; i < sol.size(); ++i) |
| 149 | 3740 | sol[i][targetPvIdx] = vec[i]; | |
| 150 | } | ||
| 151 | |||
| 152 | // structured grid vertex data | ||
| 153 |
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4 | else if (const auto extension = fileName.substr(fileName.find_last_of(".") + 1); extension == "vti" || extension == "pvti") |
| 154 | { | ||
| 155 | ✗ | std::size_t i = 0; | |
| 156 | ✗ | for (const auto& vertex : vertices(gridGeometry.gridView(), Dune::Partitions::interior + Dune::Partitions::border)) | |
| 157 | { | ||
| 158 | ✗ | const auto vIdx = gridGeometry.vertexMapper().index(vertex); | |
| 159 | ✗ | sol[vIdx][targetPvIdx] = vec[i++]; | |
| 160 | } | ||
| 161 | } | ||
| 162 | |||
| 163 | // unstructured grid vertex data | ||
| 164 | else | ||
| 165 | { | ||
| 166 |
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2 | std::size_t i = 0; |
| 167 |
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2 | std::vector<bool> visited(gridGeometry.gridView().size(dim), false); |
| 168 |
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324 | for (const auto& element : elements(gridGeometry.gridView(), Dune::Partitions::interior)) |
| 169 | { | ||
| 170 |
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480 | for (int vIdxLocal = 0; vIdxLocal < element.subEntities(dim); ++vIdxLocal) |
| 171 | { | ||
| 172 |
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320 | const auto vIdxGlobal = gridGeometry.vertexMapper().subIndex(element, vIdxLocal, dim); |
| 173 |
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320 | if (!visited[vIdxGlobal]) |
| 174 | { | ||
| 175 | 162 | sol[vIdxGlobal][targetPvIdx] = vec[i++]; | |
| 176 | 162 | visited[vIdxGlobal] = true; | |
| 177 | } | ||
| 178 | } | ||
| 179 | } | ||
| 180 | 2 | } | |
| 181 | } | ||
| 182 | 104 | } | |
| 183 | |||
| 184 | /*! | ||
| 185 | * \ingroup InputOutput | ||
| 186 | * \brief read from a sequential file into a solution vector with primary variables with state | ||
| 187 | */ | ||
| 188 | template <class SolutionVector, class PvNameFunc, class GridGeometry> | ||
| 189 | 2 | auto loadSolutionFromVtkFile(SolutionVector& sol, | |
| 190 | const std::string fileName, | ||
| 191 | PvNameFunc&& targetPvNameFunc, | ||
| 192 | const GridGeometry& gridGeometry, | ||
| 193 | const VTKReader::DataType& dataType) | ||
| 194 | -> typename std::enable_if_t<decltype(isValid(Detail::hasState())(sol[0]))::value, void> | ||
| 195 | { | ||
| 196 | 2 | VTKReader vtu(fileName); | |
| 197 | // get states at each dof location | ||
| 198 |
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4 | const auto stateAtDof = vtu.readData<std::vector<int>>("phase presence", dataType); |
| 199 | |||
| 200 | // determine all states that are present | ||
| 201 | 2 | std::unordered_set<int> states; | |
| 202 |
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658 | for (std::size_t i = 0; i < stateAtDof.size(); ++i) |
| 203 |
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656 | states.insert(stateAtDof[i]); |
| 204 | |||
| 205 | using PrimaryVariables = typename SolutionVector::block_type; | ||
| 206 | using Scalar = typename PrimaryVariables::field_type; | ||
| 207 | 2 | const std::size_t targetSolutionSize = PrimaryVariables::dimension; | |
| 208 | |||
| 209 | 2 | std::unordered_set<std::string> matchingNames; | |
| 210 |
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8 | for (std::size_t i = 0; i < targetSolutionSize; i++) |
| 211 |
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18 | for (const auto& state : states) |
| 212 |
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24 | if ( vtu.hasData(targetPvNameFunc(i,state), dataType)) |
| 213 |
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24 | matchingNames.insert(targetPvNameFunc(i,state)); |
| 214 | |||
| 215 | 2 | const std::size_t matchingLoadedArrays = matchingNames.size() - (states.size()-1); | |
| 216 | |||
| 217 |
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2 | if (matchingLoadedArrays < targetSolutionSize) |
| 218 | std::cout << "The loaded solution does not provide a data array for each of the primary variables. \n" | ||
| 219 | ✗ | << "The target solution has "<< targetSolutionSize << " entries, " | |
| 220 | ✗ | << "whereas the loaded solution provides only " << matchingLoadedArrays << " data array(s). \n" | |
| 221 | << "Make sure that the model concepts are compatible, " | ||
| 222 | ✗ | << "and be sure to provide initial conditions for the missing primary variables. \n"; | |
| 223 | |||
| 224 |
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8 | for (std::size_t targetPvIdx = 0; targetPvIdx < targetSolutionSize; ++targetPvIdx) |
| 225 | { | ||
| 226 | 6 | std::unordered_map<int, std::vector<Scalar>> data; | |
| 227 |
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18 | for (const auto& state : states) |
| 228 | { | ||
| 229 |
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12 | const auto targetPvName = targetPvNameFunc(targetPvIdx, state); |
| 230 | |||
| 231 |
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12 | if (vtu.hasData(targetPvName, dataType)) |
| 232 |
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24 | data[state] = vtu.readData<std::vector<Scalar>>(targetPvName, dataType); |
| 233 | else | ||
| 234 | { | ||
| 235 | std::cout << "Loaded Solution does not have a field named \"" << targetPvName << "\". " | ||
| 236 | ✗ | << "Make sure this field is filled using the initial method in the problem definition. \n"; | |
| 237 | continue; | ||
| 238 | } | ||
| 239 | } | ||
| 240 | |||
| 241 |
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6 | if (dataType == VTKReader::DataType::cellData) |
| 242 | { | ||
| 243 | ✗ | std::size_t i = 0; | |
| 244 | ✗ | for (const auto& element : elements(gridGeometry.gridView(), Dune::Partitions::interior)) | |
| 245 | { | ||
| 246 | ✗ | const auto eIdx = gridGeometry.elementMapper().index(element); | |
| 247 | ✗ | const auto state = stateAtDof[i]; | |
| 248 | ✗ | sol[eIdx][targetPvIdx] = data[state][i++]; | |
| 249 | ✗ | sol[eIdx].setState(state); | |
| 250 | } | ||
| 251 | } | ||
| 252 | else | ||
| 253 | { | ||
| 254 | 6 | std::size_t i = 0; | |
| 255 |
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6 | constexpr int dim = GridGeometry::GridView::dimension; |
| 256 |
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6 | std::vector<bool> visited(gridGeometry.gridView().size(dim), false); |
| 257 |
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3148 | for (const auto& element : elements(gridGeometry.gridView(), Dune::Partitions::interior)) |
| 258 | { | ||
| 259 |
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7840 | for (int vIdxLocal = 0; vIdxLocal < element.subEntities(dim); ++vIdxLocal) |
| 260 | { | ||
| 261 |
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6272 | const auto vIdxGlobal = gridGeometry.vertexMapper().subIndex(element, vIdxLocal, dim); |
| 262 |
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6272 | if (!visited[vIdxGlobal]) |
| 263 | { | ||
| 264 |
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1774 | const auto state = stateAtDof[i]; |
| 265 | 1774 | sol[vIdxGlobal][targetPvIdx] = data[state][i++]; | |
| 266 | 1774 | sol[vIdxGlobal].setState(state); | |
| 267 | 1774 | visited[vIdxGlobal] = true; | |
| 268 | } | ||
| 269 | } | ||
| 270 | } | ||
| 271 | 6 | } | |
| 272 | } | ||
| 273 | 4 | } | |
| 274 | |||
| 275 | /*! | ||
| 276 | * \ingroup InputOutput | ||
| 277 | * \brief helper function to determine the primary variable names of a model with privar state | ||
| 278 | * \note use this as input for the load solution function | ||
| 279 | */ | ||
| 280 | template<class IOFields, class PrimaryVariables, class ModelTraits = void, class FluidSystem = void, class SolidSystem = void> | ||
| 281 | 2 | auto createPVNameFunction(const std::string& paramGroup = "") | |
| 282 | -> typename std::enable_if_t<decltype(isValid(Detail::hasState())(PrimaryVariables(0)))::value, std::function<std::string(int,int)>> | ||
| 283 | { | ||
| 284 |
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6 | return [paramGroup](int pvIdx, int state = 0) |
| 285 | { | ||
| 286 | static auto numStates = (1 << ModelTraits::numFluidPhases()) - 1; | ||
| 287 |
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72 | const auto paramNameWithState = "LoadSolution.PriVarNamesState" + std::to_string(state); |
| 288 | |||
| 289 |
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108 | if (hasParamInGroup(paramGroup, "LoadSolution.PriVarNames") && !hasParamInGroup(paramGroup, paramNameWithState)) |
| 290 | ✗ | DUNE_THROW(Dune::NotImplemented, "please provide LoadSolution.PriVarNamesState1..." << numStates | |
| 291 | << " or remove LoadSolution.PriVarNames to use the model's default primary variable names"); | ||
| 292 | |||
| 293 |
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72 | else if (hasParamInGroup(paramGroup, paramNameWithState)) |
| 294 | { | ||
| 295 |
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12 | const auto pvName = getParamFromGroup<std::vector<std::string>>(paramGroup, paramNameWithState); |
| 296 |
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12 | return pvName[pvIdx]; |
| 297 | 12 | } | |
| 298 | else | ||
| 299 |
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24 | return IOFields::template primaryVariableName<ModelTraits, FluidSystem, SolidSystem>(pvIdx, state); |
| 300 |
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40 | }; |
| 301 | } | ||
| 302 | |||
| 303 | /*! | ||
| 304 | * \ingroup InputOutput | ||
| 305 | * \brief helper function to determine the primary variable names of a model without state | ||
| 306 | * \note use this as input for the load solution function | ||
| 307 | */ | ||
| 308 | template<class IOFields, class PrimaryVariables, class ModelTraits = void, class FluidSystem = void, class SolidSystem = void> | ||
| 309 | 4 | auto createPVNameFunction(const std::string& paramGroup = "") | |
| 310 | -> typename std::enable_if_t<!decltype(isValid(Detail::hasState())(PrimaryVariables(0)))::value, std::function<std::string(int,int)>> | ||
| 311 | { | ||
| 312 |
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8 | if (hasParamInGroup(paramGroup, "LoadSolution.PriVarNames")) |
| 313 | { | ||
| 314 | ✗ | const auto pvName = getParamFromGroup<std::vector<std::string>>(paramGroup, "LoadSolution.PriVarNames"); | |
| 315 | ✗ | return [n = std::move(pvName)](int pvIdx, int state = 0){ return n[pvIdx]; }; | |
| 316 | ✗ | } | |
| 317 | else | ||
| 318 | 16 | return [](int pvIdx, int state = 0){ return IOFields::template primaryVariableName<ModelTraits, FluidSystem, SolidSystem>(pvIdx, state); }; | |
| 319 | } | ||
| 320 | |||
| 321 | /*! | ||
| 322 | * \ingroup InputOutput | ||
| 323 | * \brief load a solution vector from file | ||
| 324 | * \note Supports the following file extensions: *.vtu *.vtp *.pvtu, *.pvtp | ||
| 325 | * \param sol the solution vector to read from file | ||
| 326 | * \param fileName the file name of the file to read from | ||
| 327 | * \param targetPvNameFunc a function with the signature std::string(int pvIdx) | ||
| 328 | * in case the primary variables have a state the signature is std::string(int pvIdx, int state) | ||
| 329 | * \param gridGeometry the grid geometry of the discretization method used | ||
| 330 | */ | ||
| 331 | template <class SolutionVector, class PvNameFunc, class GridGeometry> | ||
| 332 | 106 | void loadSolution(SolutionVector& sol, | |
| 333 | const std::string& fileName, | ||
| 334 | PvNameFunc&& targetPvNameFunc, | ||
| 335 | const GridGeometry& gridGeometry) | ||
| 336 | { | ||
| 337 | 106 | const auto extension = fileName.substr(fileName.find_last_of(".") + 1); | |
| 338 | 106 | auto dataType = GridGeometry::discMethod == DiscretizationMethods::box ? | |
| 339 | VTKReader::DataType::pointData : VTKReader::DataType::cellData; | ||
| 340 | |||
| 341 |
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106 | if (extension == "vtu" || extension == "vtp" || extension == "vti") |
| 342 | { | ||
| 343 |
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100 | if (GridGeometry::discMethod == DiscretizationMethods::staggered && extension == "vtp") |
| 344 | 50 | dataType = VTKReader::DataType::pointData; | |
| 345 | |||
| 346 |
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108 | loadSolutionFromVtkFile(sol, fileName, targetPvNameFunc, gridGeometry, dataType); |
| 347 | } | ||
| 348 |
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2 | else if (extension == "pvtu" || extension == "pvtp" || extension == "pvti") |
| 349 | { | ||
| 350 | if (GridGeometry::discMethod == DiscretizationMethods::staggered) | ||
| 351 |
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2 | DUNE_THROW(Dune::NotImplemented, "reading staggered solution from a parallel vtk file"); |
| 352 | |||
| 353 |
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4 | loadSolutionFromVtkFile(sol, fileName, targetPvNameFunc, gridGeometry, dataType); |
| 354 | } | ||
| 355 | else | ||
| 356 | ✗ | DUNE_THROW(Dune::NotImplemented, "loadSolution for file with extension " << extension); | |
| 357 | |||
| 358 | // communicate solution on ghost and overlap dofs | ||
| 359 |
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106 | if (gridGeometry.gridView().comm().size() > 1) |
| 360 | { | ||
| 361 | using GridView = typename GridGeometry::GridView; | ||
| 362 | ✗ | if (dataType == VTKReader::DataType::cellData) | |
| 363 | { | ||
| 364 | LoadSolutionDataHandle<SolutionVector, typename GridGeometry::ElementMapper, 0> | ||
| 365 |
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2 | dataHandle(sol, gridGeometry.elementMapper()); |
| 366 | |||
| 367 | if constexpr (Detail::canCommunicate<typename GridView::Traits::Grid, 0>) | ||
| 368 |
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2 | gridGeometry.gridView().communicate(dataHandle, |
| 369 | Dune::InteriorBorder_All_Interface, | ||
| 370 | Dune::ForwardCommunication); | ||
| 371 | else | ||
| 372 | DUNE_THROW(Dune::InvalidStateException, "Cannot call loadSolution on multiple processes for a grid that cannot communicate codim-" << 0 << "-entities."); | ||
| 373 | 2 | } | |
| 374 | else | ||
| 375 | { | ||
| 376 | LoadSolutionDataHandle<SolutionVector, typename GridGeometry::VertexMapper, GridView::dimension> | ||
| 377 | ✗ | dataHandle(sol, gridGeometry.vertexMapper()); | |
| 378 | |||
| 379 | if constexpr (Detail::canCommunicate<typename GridView::Traits::Grid, GridView::dimension>) | ||
| 380 | ✗ | gridGeometry.gridView().communicate(dataHandle, | |
| 381 | Dune::InteriorBorder_All_Interface, | ||
| 382 | Dune::ForwardCommunication); | ||
| 383 | else | ||
| 384 | DUNE_THROW(Dune::InvalidStateException, "Cannot call loadSolution on multiple processes for a grid that cannot communicate codim-" << GridView::dimension << "-entities."); | ||
| 385 | ✗ | } | |
| 386 | } | ||
| 387 | 106 | } | |
| 388 | } // end namespace Dumux | ||
| 389 | |||
| 390 | #endif | ||
| 391 |